9 releases (5 breaking)
0.9.2 | Dec 16, 2020 |
---|---|
0.9.0 | Oct 17, 2020 |
0.4.0 | Jul 2, 2020 |
#319 in Science
41 downloads per month
195KB
4K
SLoC
expjobserver
This is a job server and client for running many experiments across many test machines. In some sense, it is like a simple cluster manager.
The high-level idea is that you have a server (the expjobserver
) that runs on
your machine (some machine that is always on, like a desktop), perhaps in a
screen session or something. You have a bunch of experiments that you want to
run from some driver application or script. You also have a bunch of machines,
possibly of different types, where you want to run jobs. expjobserver
schedules
those jobs to run on those machines and copies the results back to the host
machine (the one running the server). One interracts with the server using the
stateless CLI client.
Additionally, expjobserver
supports the following:
- An awesome CLI client, with the ability to generate shell completion scripts.
- Machine classes: similar machines are added to the same class, and jobs are scheduled to run on any machine in the class.
- Machine setup: the
expjobserver
can run a sequence of setup machines and automatically add machines to its class when finished. - Job matrices: Run jobs with different combinations of parameters.
- Automatically copies results back to the host, as long as the experiment
driver outputs a line to
stdout
with formatRESULTS: <OUTPUT FILENAME>
. - Good server logging.
- Tries to be a bit resilient to failures, crashes, and mismatching server/client version by using protobufs to save server history and communicate with client"
Prerequisites
rust 1.37+
Installing
cargo install expjobserver
This will install both the client (j
) and server (expjobserver
).
Building
These commands both build client and server:
# Debug
cargo build
# Release
cargo build --release
In practice, it doesn't matter, as I've disable optimizations and added debuginfo for the release build too. The reason is that performance doesn't matter that much here (and the server isn't performance-optimized anyway), whereas debuggability is very helpful.
Usage
Running the server
expjobserver \
/path/to/experiment/driver \
/path/to/logs/ \
/path/to/log4rs/config.yaml
The first time you run it, you will need to pass the --allow_snap_fail
flag,
which allows overwriting server history. The default is to fail and exit if
loading history fails. It is intended to give a little bit of safety so that if
you restart in a weird configuration it won't wipe out your server's history,
which can be annoying.
You may want to run the server in a screen
or tmux
session. That way, you
can detach and leave it running in the background. You can always check the
logs by either attaching again or looking at /path/to/logs
from the command,
where the server will dump debug logs.
The server uses the log4rs
library for logging. It is highly configurable.
example.log.yml
is a reasonable config that I use.
To use it, point the server to it using the second argument in the command.
Running the client
j --help
There are a lot of subcommands. They are well-documented by the CLI usage message.
Examples
This is mostly intended as a quick tour of what you can do (for the client side).
It's not comprehensive. Read the usage message (--help
) for more info on all
the things you can do. There are a lot of nifty features!
Adding machines to the pool
First, let's list the machines in the pool.
$ j machine ls
Currently, there are none. Let's add some. If we have machine already set up,
we can use j machine add
, but we can also have a machine run a setup script
and be automatically added to the pool afterwards.
$ j machine setup --class foo -m my.machine.foo.com:22 -- "setup-the-thing {MACHINE} --flag --blah" "another-setup-command"
Server response: Jiresp(
JobIdResp {
jid: 0,
},
)
Here {MACHINE}
is replaced automatically by my.machine.foo.com:22
. You can
also use other variables (see the j var
commands). This can help in a few ways:
{MACHINE}
allows you to use the same command for multiple machines (you can pass-m
multiple times).- You can use other variables to minimize the number of secrets that end up in your bash history (e.g. if you need a github token or something).
At this point, the machine my.machine.foo.com:22
will start running the
listed commands in the given order. Assuming that they all succeed, the machine
will be added to the foo
class in the pool and will be ready to run any jobs
that request a foo
-class machine.
Listing and Enqueuing Jobs
The jid: 0
in the server response above is the job ID of the setup task. We
can see the currently running tasks, including setup tasks.
$ j job ls
Job Status Class Command Machine Output
0 Running foo setup-the-thing {MACHINE} --flag --blah my.machine.foo.com:22
Currently, the only thing running so far is the setup task we started above.
We can queue up some other jobs for foo
-class machines to run on it when ready:
$ j job add foo "bar --the --foo baz" /path/to/results/dir -x 3
Server response: Jiresp(
JobIdResp {
jid: 1,
},
)
Server response: Jiresp(
JobIdResp {
jid: 2,
},
)
Server response: Jiresp(
JobIdResp {
jid: 3,
},
)
Here we enqueue 3 identical tasks to run on the first available foo
machine.
The jobs run in the enqueued order.
$ j job ls
Job Status Class Command Machine Output
0 Done foo setup-the-thing {MACHINE} --flag --blah my.machine.foo.com:22
1 Running foo bar --the --foo baz my.machine.foo.com:22
2 Waiting foo bar --the --foo baz
3 Waiting foo bar --the --foo baz
We can look at the job's stdout (using tail
):
j job log -t 1
where 1
is the job ID from the table above for the running task. You can also
look at the log of completed tasks or get the path of the log file:
$ j job log -l 0 # look at the log of 0 with `less`
...
$ j job log 0 # path to the log file
/some/path/0-setup-the-thing_my.machine.foo.com:22_--flag_--blah
Job Matrices
Sometimes you want to run a bunch of similar commands with slight variations (e.g. to see the effect of varying a parameter).
You can do this with j job matrix
:
j job matrix add foo "my-experiment-cmd --param0 {I} --param1 {J} --param2 {K}" \
/path/to/copy/results/ I=1,2,3,4 J=linear,quadratic,exotic K=banana,rockingchair,airplane
This command will enqueue 4x3x3 = 36 jobs, which you can see with j job ls
or
j job matrix stat
.
Moreover, you can dump a CSV of the matrix and any results paths using j job matrix csv
.
More
Take a look at the --help
message for the various commands and subcommand to
learn about even more goodies.
Dependencies
~8–11MB
~190K SLoC