#proteomics #algorithm #data #census #mass-spectrometry #bioinformatics #parser

census-proteomics

Rust library for working with proteomics data quantified by the Census algorithm

12 releases

0.3.3 Jan 18, 2021
0.3.2 Jan 18, 2021
0.3.1 Sep 20, 2020
0.3.0 Aug 5, 2020
0.1.4 May 13, 2019

#193 in Biology

Download history 14/week @ 2024-03-29 8/week @ 2024-04-05 1/week @ 2024-04-19 3/week @ 2024-05-31 1/week @ 2024-06-07

52 downloads per month
Used in census2csv

MIT license

26KB
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census

A high-performance Rust library for parsing, filtering, and manipulating multiplexed isobaric proteomics data quantified using the Census algorithm.

Our work uses the Census algoritm (as part of IP2) to quantify TMT (tandem mass tag) proteomics data from complex samples. A fast,

Citation for census algorithm:

Census 2: Isobaric labeling data analysis, Bioinformatics. 2014 Mar 28

A quantitative analysis software tool for mass spectrometry.based proteomics. Sung Kyu Park, John D Venable, Tao Xu, John R Yates III, Nature Methods, 2008, 5, 319-322


lib.rs:

A high-performance Rust library for parsing, filtering, and manipulating multiplexed isobaric data that has been quantified using the Census algorithm

Dependencies

~2.2–3.5MB
~57K SLoC