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#bioinformatics #exon #sam #object-storage #data #sql #multi-language

exon-sam

Exon SAM

by Trent Hauck

34 releases (16 breaking)

new 0.21.0 May 17, 2024
0.19.1 Apr 23, 2024
0.15.0 Mar 27, 2024
0.5.5 Dec 18, 2023

#5 in #sam

Download history 26/week @ 2024-01-26 51/week @ 2024-02-02 51/week @ 2024-02-09 70/week @ 2024-02-16 476/week @ 2024-02-23 396/week @ 2024-03-01 607/week @ 2024-03-08 393/week @ 2024-03-15 209/week @ 2024-03-22 86/week @ 2024-03-29 121/week @ 2024-04-05 768/week @ 2024-04-12 1300/week @ 2024-04-19 182/week @ 2024-04-26 61/week @ 2024-05-03

2,325 downloads per month
Used in 4 crates (3 directly)

Apache-2.0

79KB
1.5K SLoC

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~69MB
~1.5M SLoC