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#bioinformatics #cram #exon #arrow #file-format #sql #ddl

exon-cram

Exon CRAM

by Trent Hauck

21 releases (9 breaking)

new 0.24.1 May 30, 2024
0.23.0 May 27, 2024
0.15.0 Mar 27, 2024

#2818 in Parser implementations

Download history 156/week @ 2024-03-27 43/week @ 2024-04-03 166/week @ 2024-04-10 1003/week @ 2024-04-17 557/week @ 2024-04-24 81/week @ 2024-05-01 34/week @ 2024-05-08 453/week @ 2024-05-15 824/week @ 2024-05-22

1,406 downloads per month
Used in exon

Apache-2.0

110KB
2K SLoC

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~70MB
~1.5M SLoC