Lib.rs

› Science › Biology
#bioinformatics #min-hash #sketch #data #genomics #k-mer #sequences

sourmash

tools for comparing biological sequences with k-mer sketches

by Luiz Irber, C. Titus Brown and 37 contributors

14 releases (breaking)

0.13.1 Mar 23, 2024
0.12.1 Feb 10, 2024
0.12.0 Dec 1, 2023
0.11.0 Jul 8, 2021
0.1.1 Mar 13, 2018

#53 in Biology

Download history 41/week @ 2024-01-20 11/week @ 2024-01-27 8/week @ 2024-02-03 54/week @ 2024-02-10 153/week @ 2024-02-17 140/week @ 2024-02-24 72/week @ 2024-03-02 32/week @ 2024-03-09 70/week @ 2024-03-16 196/week @ 2024-03-23 82/week @ 2024-03-30 39/week @ 2024-04-06 4/week @ 2024-04-13 18/week @ 2024-04-20 9/week @ 2024-04-27 86/week @ 2024-05-04

120 downloads per month
Used in jam-rs

BSD-3-Clause

395KB
10K SLoC

sourmash

🦀 Rust API Documentation on docs.rs build-status codecov License: 3-Clause BSD

Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences.

This is the core library used by sourmash. It exposes a C API that can be called from FFI in other languages, and it is how we use it in Python for building the sourmash application (CLI and Python API).

sourmash is a product of the Lab for Data-Intensive Biology at the UC Davis School of Veterinary Medicine.

Support

Please ask questions and files issues on Github.

Development

Development happens on github at sourmash-bio/sourmash.

Minimum supported Rust version

Currently the minimum supported Rust version is 1.65.0.

Dependencies

~11–19MB
~360K SLoC