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#bioinformatics #bcf #exon #data #file #format #object

exon-bcf

Exon BCF

by Trent Hauck

38 releases (18 breaking)

new 0.23.0 May 27, 2024
0.21.1 May 20, 2024
0.15.0 Mar 27, 2024
0.5.5 Dec 18, 2023

#4 in #bcf

Download history 184/week @ 2024-02-05 3/week @ 2024-02-12 95/week @ 2024-02-19 557/week @ 2024-02-26 495/week @ 2024-03-04 679/week @ 2024-03-11 160/week @ 2024-03-18 211/week @ 2024-03-25 85/week @ 2024-04-01 164/week @ 2024-04-08 1058/week @ 2024-04-15 951/week @ 2024-04-22 115/week @ 2024-04-29 30/week @ 2024-05-06 248/week @ 2024-05-13 727/week @ 2024-05-20

1,152 downloads per month
Used in 3 crates (via exon)

Apache-2.0

89KB
1.5K SLoC

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~68MB
~1.5M SLoC